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Model Integration in Computational Biology: The Role of Reproducibility, Credibility and Utility

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IMAG/MSM Working Group on MULTISCALE MODELING AND VIRAL PANDEMICS. Miniseminar presentation by Jacob Barhak


A white paper draft by the Model Reproducibility, Credibility and Standardization subgroup and the Integration subgroup. Link to white paper draft:
https://docs.google.com/document/d/1IMEgmdNkx-EsnOjGuegpenSIMmKIkK00Lc8Gred3QxM/edit?usp=sharing


https://simtk.org/projects/vp-reproduce
https://simtk.org/projects/vp-integration




https://www.imagwiki.nibib.nih.gov/working-groups/multiscale-modeling-and-viral-pandemics

Edited by Juliano Ferrari Gianlupi

Kinetics of virus growth in cells

Multiscale modeling of infection dynamics with a focus on the intracellular scale

Dissemination and Outreach Subgroup. Topic: IMAG/MSM Virtual Conference

The Structure and functioning of IMAG and the Multiscale Modeling Consortium, by Dr. Grace Peng

Modeling Viral-Bacterial Coinfections, by Amber Smith

Inaugural Viral Pandemic WG teleconf Oct 22 2020

WG Seminars: Smith, Modeling Viral Bacterial Coinfection, December 10, 2020

Rapid community-driven development of SARS-CoV-2 tissue simulator, by Paul Macklin

Data Dissemination and Modeling of Infectious Diseases: A NIAID Perspective, by Shabman & Brown

COVID-19 Disease Map, computational knowledge repository of SARS-2 virus-host interaction mechanisms

Complete Kinetic modeling of an RNA pathogen by Kevin Janes

A THEORY FOR MULTISCALE MODELLING OF DISEASE DYNAMICS

A model for the inflammatory response to SARS-CoV-2 in the upper/lower-respiratory tracts

SARS-CoV-2 infection: a cohort study performed in-silico, by Filippo Castiglione

Viral Evolution Subgroup Update

The total number and mass of SARS-CoV-2 virions in an infected person

Biophysical modeling of the SARS-CoV-2 viral cycle reveals ideal antiviral targets

Post April 1st meeting discussion

Data-driven modeling of COVID-19 lessons learned

Innate and Adaptive Immune Response Subgroup Plan

Multiscale Simulation of Lung Fibrosis Induced by SARS-CoV2 Infection and Acute Respiratory Distress

WG Seminars: Janes, Enteroviral Infection, Waites, SARS-CoV-2 Modeling, February 10, 2022

WG Seminars: Adler, Viral Evolution and Rice, IMAG/MSM Interests, May 13, 2021

Value of Reducing the Duration of SARS-CoV-2 Infectious Period

WG Seminars: Perelson, SARS-CoV-2 Modeling, and Adler, Rhinovirus Modeling, November 19, 2020

CLIMATE, OCEANS, AND HUMAN HEALTH: What Cholera can teach us about COVID-19

The immune response to SARS-CoV-2: Friend or Foe?

Cell collective: enabling accessible and collaborative construction of models

WG Seminars: Niarakis, COVID-19 Disease Map, January 28, 2021

WG Seminars: Li, Molecular Dynamics Simulations of SARS-CoV-2, November 5, 2020

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